Detailed information NTG0956285

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WGR88_RS21180
• Genome accession: NZ_CP148938
• Coordinates: 4268622..4269422 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain FUJ80044
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4263622..4274422

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WGR88_RS21145 (WGR88_21080)	gspH	4263778..4264293 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
WGR88_RS21150 (WGR88_21085)	gspI	4264290..4264655 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
WGR88_RS21155 (WGR88_21090)	gspJ	4264652..4265248 (+)	597	WP_023159595.1	type II secretion system minor pseudopilin GspJ	-
WGR88_RS21160 (WGR88_21095)	gspK	4265245..4266231 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
WGR88_RS21165 (WGR88_21100)	gspL	4266218..4267411 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
WGR88_RS21170 (WGR88_21105)	-	4267404..4267889 (+)	486	WP_040236726.1	type II secretion system protein M	-
WGR88_RS21175 (WGR88_21110)	-	4267879..4268625 (+)	747	WP_004178605.1	type II secretion system protein N	-
WGR88_RS21180 (WGR88_21115)	pilD	4268622..4269422 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
WGR88_RS21185 (WGR88_21120)	hrpB	4269470..4271899 (-)	2430	WP_040236129.1	ATP-dependent helicase HrpB	-
WGR88_RS21190 (WGR88_21125)	thpR	4271972..4272508 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
WGR88_RS21195 (WGR88_21130)	sfsA	4272508..4273224 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WGR88_RS21200 (WGR88_21135)	dksA	4273387..4273842 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=956285 WGR88_RS21180 WP_004191960.1 4268622..4269422(+) (pilD) [Klebsiella pneumoniae strain FUJ80044]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=956285 WGR88_RS21180 WP_004191960.1 4268622..4269422(+) (pilD) [Klebsiella pneumoniae strain FUJ80044]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCAGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTATTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGAGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421