Detailed information NTG0956128

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q6225_RS13325
• Genome accession: NZ_CP148900
• Coordinates: 2867725..2868594 (+)
• Length: 289 a.a.
• NCBI ID: WP_017635919.1
• Uniprot ID: A0A2I3C9C8
• Organism: Vibrio alginolyticus strain I1B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2862725..2873594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q6225_RS13305 (Q6225_13300)	nadC	2863141..2864028 (+)	888	WP_104975579.1	carboxylating nicotinate-nucleotide diphosphorylase	-
Q6225_RS13310 (Q6225_13305)	-	2864291..2864731 (+)	441	WP_017447682.1	pilin	-
Q6225_RS13315 (Q6225_13310)	pilB	2864728..2866413 (+)	1686	WP_053304129.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q6225_RS13320 (Q6225_13315)	pilC	2866437..2867660 (+)	1224	WP_047102659.1	type II secretion system F family protein	Machinery gene
Q6225_RS13325 (Q6225_13320)	pilD	2867725..2868594 (+)	870	WP_017635919.1	A24 family peptidase	Machinery gene
Q6225_RS13330 (Q6225_13325)	coaE	2868595..2869209 (+)	615	WP_065274841.1	dephospho-CoA kinase	-
Q6225_RS13335 (Q6225_13330)	zapD	2869237..2869977 (+)	741	WP_005373086.1	cell division protein ZapD	-
Q6225_RS13340 (Q6225_13335)	yacG	2870136..2870330 (+)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
Q6225_RS13345 (Q6225_13340)	rplS	2871157..2871510 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
Q6225_RS13350 (Q6225_13345)	trmD	2871552..2872313 (-)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
Q6225_RS13355 (Q6225_13350)	rimM	2872341..2872889 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
Q6225_RS13360 (Q6225_13355)	rpsP	2872919..2873167 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32563.76 Da
• Isoelectric Point: 6.8450

>NTDB_id=956128 Q6225_RS13325 WP_017635919.1 2867725..2868594(+) (pilD) [Vibrio alginolyticus strain I1B]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=956128 Q6225_RS13325 WP_017635919.1 2867725..2868594(+) (pilD) [Vibrio alginolyticus strain I1B]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTATTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A2I3C9C8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457