Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACF2JY_RS05790 Genome accession   NZ_CP172966
Coordinates   1137290..1139062 (+) Length   590 a.a.
NCBI ID   WP_044052482.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1132290..1144062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS05770 (ACF2JY_05770) etfB 1133029..1133802 (+) 774 WP_014480500.1 electron transfer flavoprotein subunit beta -
  ACF2JY_RS05775 (ACF2JY_05775) etfA 1133838..1134815 (+) 978 WP_003229553.1 electron transfer flavoprotein subunit alpha -
  ACF2JY_RS05780 (ACF2JY_05780) abfB 1135030..1136517 (+) 1488 WP_026009861.1 alpha-L-arabinofuranosidase AbfB -
  ACF2JY_RS05785 (ACF2JY_05785) trxA 1136840..1137154 (+) 315 WP_003222500.1 thioredoxin -
  ACF2JY_RS05790 (ACF2JY_05790) uvrC 1137290..1139062 (+) 1773 WP_044052482.1 excinuclease ABC subunit UvrC Machinery gene
  ACF2JY_RS05795 (ACF2JY_05795) - 1139432..1140658 (+) 1227 WP_003229564.1 aspartate kinase -
  ACF2JY_RS05800 (ACF2JY_05800) yslB 1140702..1141148 (-) 447 WP_003222508.1 YslB family protein -
  ACF2JY_RS05805 (ACF2JY_05805) sdhC 1141441..1142049 (+) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  ACF2JY_RS05810 (ACF2JY_05810) sdhA 1142083..1143843 (+) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68548.38 Da        Isoelectric Point: 9.4732

>NTDB_id=956089 ACF2JY_RS05790 WP_044052482.1 1137290..1139062(+) (uvrC) [Bacillus subtilis strain cel]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQMAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGEPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPTAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=956089 ACF2JY_RS05790 WP_044052482.1 1137290..1139062(+) (uvrC) [Bacillus subtilis strain cel]
ATGAACAAACAACTGAAAGAAAAACTCGCTCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACCCGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCAAAAGAGCTTCGTGACCAAATGGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTGTTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
AAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCAATCTATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAAAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGAGCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAATATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGATGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACTGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATTATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTCTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGAGCCGCTGGAGGTAGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAAGACGAGGTGCACCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCACAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(197-229)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.014

99.661

0.588
  uvrC Streptococcus pneumoniae R6

58.673

99.661

0.585
  uvrC Streptococcus pneumoniae D39

58.673

99.661

0.585