NTDB

Overview

Name	recG	Type	Machinery gene
Locus tag	ACIJUN_RS21090	Genome accession	NZ_CP172962
Coordinates	4520442..4522517 (+)	Length	691 a.a.
NCBI ID	WP_003096624.1	Uniprot ID	A0A0H2ZJ60
Organism	Pseudomonas aeruginosa strain YB1
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4515442..4527517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIJUN_RS21060 (ACIJUN_21065)	-	4515864..4516244 (+)	381	WP_003096609.1	RidA family protein	-
ACIJUN_RS21065 (ACIJUN_21070)	-	4516299..4517030 (+)	732	WP_023465407.1	hypothetical protein	-
ACIJUN_RS21070 (ACIJUN_21075)	-	4517037..4517657 (-)	621	WP_003096613.1	LysE family translocator	-
ACIJUN_RS21075 (ACIJUN_21080)	-	4517724..4518524 (-)	801	WP_003114367.1	AraC family transcriptional regulator	-
ACIJUN_RS21080 (ACIJUN_21085)	-	4518524..4519375 (-)	852	WP_003096618.1	SDR family oxidoreductase	-
ACIJUN_RS21085 (ACIJUN_21090)	oxyR	4519513..4520445 (+)	933	WP_003096622.1	oxidative stress transcriptional regulator OxyR	-
ACIJUN_RS21090 (ACIJUN_21095)	recG	4520442..4522517 (+)	2076	WP_003096624.1	ATP-dependent DNA helicase RecG	Machinery gene
ACIJUN_RS21095 (ACIJUN_21100)	-	4522607..4524016 (+)	1410	WP_003098324.1	HDOD domain-containing protein	-
ACIJUN_RS21100 (ACIJUN_21105)	-	4524088..4524480 (-)	393	WP_003096629.1	hypothetical protein	-
ACIJUN_RS21105 (ACIJUN_21110)	-	4524616..4524888 (-)	273	WP_003096630.1	HU family DNA-binding protein	-
ACIJUN_RS21110 (ACIJUN_21115)	alkT	4525090..4526244 (-)	1155	WP_003098326.1	rubredoxin-NAD(+) reductase AlkT	-
ACIJUN_RS21115 (ACIJUN_21120)	-	4526296..4526463 (-)	168	WP_003098329.1	rubredoxin	-
ACIJUN_RS21120 (ACIJUN_21125)	-	4526647..4526814 (-)	168	WP_003098330.1	rubredoxin	-
ACIJUN_RS21125 (ACIJUN_21130)	-	4526948..4527349 (-)	402	WP_003096637.1	heme-binding protein	-

Sequence

Protein

Download Length: 691 a.a. Molecular weight: 76178.88 Da Isoelectric Point: 7.2591

                                >NTDB_id=956028 ACIJUN_RS21090 WP_003096624.1 4520442..4522517(+) (recG) [Pseudomonas aeruginosa strain YB1]

MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL

VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR

LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR

EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV

ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR

FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE

GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA

SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG

LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide

Download Length: 2076 bp

                                >NTDB_id=956028 ACIJUN_RS21090 WP_003096624.1 4520442..4522517(+) (recG) [Pseudomonas aeruginosa strain YB1]

ATGACCGAGCTGTCCAGGGTCCCGGTTACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG

CCTGGAAACCCTGCAGGATATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC

TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG

GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG

CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC

TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC

CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG

CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG

CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC

GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT

CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG

TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG

GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA

AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG

TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC

TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC

CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC

GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA

GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA

AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA

TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC

AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG

CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA

CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC

CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT

GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0H2ZJ60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recG	Neisseria meningitidis strain C311	50.373	97.106	0.489
recG/mmsA	Streptococcus pneumoniae R6	40.868	96.671	0.395
recG/mmsA	Streptococcus pneumoniae R36A	40.868	96.671	0.395
recG	Bacillus subtilis subsp. subtilis str. 168	40.356	97.54	0.394

Detailed information NTG0956028