Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WHX55_RS26780 Genome accession   NZ_CP148752
Coordinates   5880424..5881761 (+) Length   445 a.a.
NCBI ID   WP_150754966.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5875424..5886761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS26755 (WHX55_26725) pgeF 5876861..5877586 (-) 726 WP_150757737.1 peptidoglycan editing factor PgeF -
  WHX55_RS26760 (WHX55_26730) rluD 5877583..5878545 (-) 963 WP_008052092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  WHX55_RS26765 (WHX55_26735) - 5878697..5879719 (+) 1023 WP_150754964.1 outer membrane protein assembly factor BamD -
  WHX55_RS26770 (WHX55_26740) - 5879845..5880078 (+) 234 WP_150727047.1 PP0621 family protein -
  WHX55_RS26775 (WHX55_26745) - 5880107..5880427 (+) 321 Protein_5264 hypothetical protein -
  WHX55_RS26780 (WHX55_26750) pilR 5880424..5881761 (+) 1338 WP_150754966.1 sigma-54 dependent transcriptional regulator Regulator
  WHX55_RS26785 (WHX55_26755) thiO 5881766..5882866 (-) 1101 WP_150754967.1 glycine oxidase ThiO -
  WHX55_RS26790 (WHX55_26760) - 5882923..5883324 (-) 402 WP_150757741.1 type IV pilin protein -
  WHX55_RS26795 (WHX55_26765) - 5883339..5883752 (-) 414 WP_150727042.1 hypothetical protein -
  WHX55_RS26800 (WHX55_26770) - 5883739..5884218 (-) 480 WP_150754969.1 PilX N-terminal domain-containing pilus assembly protein -
  WHX55_RS26805 (WHX55_26775) - 5884229..5884936 (-) 708 WP_150754970.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WHX55_RS26810 (WHX55_26780) pilV 5884933..5885382 (-) 450 WP_150754971.1 type IV pilus modification protein PilV -
  WHX55_RS26815 (WHX55_26785) - 5885379..5885852 (-) 474 WP_150727038.1 GspH/FimT family protein -
  WHX55_RS26820 (WHX55_26790) - 5885983..5886522 (+) 540 WP_353741601.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49649.99 Da        Isoelectric Point: 6.9220

>NTDB_id=955456 WHX55_RS26780 WP_150754966.1 5880424..5881761(+) (pilR) [Pseudomonas fluorescens strain AB1]
MNTRPRQKVLIVDDEPDIRELLEITLGRMKLETFNARNVGEAQSLLKRETFDLCLTDMQLSDGTGLELVQHIQQRHPQVQ
VAMITAYDSLENAINVLKAGAFDFLTKPVDLTRLRELVTSALLVPARGGGIDRCLLGDSLPMRNLRKHITKLASSHATVY
ISGESGSGKELVARLIHDQSPRVNQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKSGLFQTAHGGTLLLDEVADLP
LTMQVKLLRAIQEKAVRSVGGQQEVAVDVRILCATHKDLGAEVAAGRFRHDLYYRLNVIELPVPPLRERRDDIEMLASHI
LKRLAADTGQPAARLHPQALDALKSYRFPGNVRELENMLERAHTLCENKQIEAGDLRLAEGNCGAEGGVPDLTRIDNLET
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=955456 WHX55_RS26780 WP_150754966.1 5880424..5881761(+) (pilR) [Pseudomonas fluorescens strain AB1]
TTGAACACCAGACCACGACAAAAAGTCTTGATCGTCGATGACGAACCGGACATTCGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAACTGGAGACGTTCAACGCCCGCAACGTCGGCGAAGCGCAATCCCTGCTCAAACGCGAAACCTTCGATCTAT
GCCTGACCGACATGCAATTGTCGGACGGTACCGGCCTGGAGCTGGTGCAGCACATCCAGCAGCGCCACCCTCAGGTCCAG
GTGGCGATGATCACCGCCTATGACAGTCTCGAAAACGCGATCAATGTGCTCAAGGCCGGGGCATTCGACTTCCTGACCAA
ACCGGTGGACCTTACGCGCTTGCGTGAACTGGTCACCAGCGCCCTGCTGGTTCCTGCCCGCGGGGGCGGTATCGATCGAT
GCTTGCTGGGCGACTCATTGCCCATGCGTAACCTGCGCAAACACATCACCAAACTGGCCAGCAGCCATGCGACGGTATAC
ATCAGCGGAGAATCCGGCAGCGGCAAGGAATTGGTCGCGCGCCTGATCCATGATCAAAGCCCCCGCGTCAATCAGCCGTT
CATTGCGATCAACTGCGCGGCGATCCCTTCGGAGCTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGTTTCAGCG
GCGCCATCGAAGACAAATCCGGCCTGTTCCAGACAGCACACGGCGGCACCCTGCTCCTCGACGAAGTGGCTGACCTGCCA
CTGACCATGCAAGTCAAACTGCTGCGCGCGATTCAGGAAAAAGCCGTACGCAGCGTCGGCGGGCAGCAGGAAGTGGCGGT
GGATGTGCGCATTCTCTGCGCCACCCACAAAGACCTTGGCGCCGAAGTTGCCGCCGGACGATTTCGTCATGATCTTTACT
ACCGTTTGAACGTGATCGAACTCCCGGTGCCGCCCTTGCGCGAGCGTCGTGATGACATCGAAATGCTAGCCAGCCACATA
CTCAAGCGCCTGGCCGCCGATACCGGTCAACCTGCCGCGAGACTCCACCCCCAAGCCCTCGATGCGCTGAAAAGCTATCG
CTTCCCGGGCAATGTTCGGGAACTGGAAAACATGCTCGAACGGGCGCACACCTTGTGTGAGAACAAACAGATCGAAGCCG
GCGACCTGCGCCTGGCTGAAGGCAACTGTGGGGCTGAGGGTGGCGTGCCGGACCTGACCCGGATCGACAATCTGGAAACC
TACCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTGGAGGAAACACGCTGGAACCGCACGGCGGCGGCTCAGCG
GTTGAATCTGTCATTCAGGTCAATGCGTTACCGGCTCAAGAAGCTGGGATTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

74.944

99.551

0.746
  pilR Acinetobacter baumannii strain A118

47.391

100

0.49