Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACIA69_RS09680 Genome accession   NZ_CP172817
Coordinates   1930583..1931239 (-) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain HS-01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925583..1936239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA69_RS09650 yecA 1926834..1927499 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  ACIA69_RS09670 pgsA 1928149..1928697 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACIA69_RS09675 uvrC 1928754..1930586 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ACIA69_RS09680 letA 1930583..1931239 (-) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACIA69_RS09685 yecU 1931535..1931711 (+) 177 WP_001307856.1 protein YecU -
  ACIA69_RS09690 yecF 1931698..1931922 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACIA69_RS09695 sdiA 1931989..1932711 (-) 723 WP_097290357.1 transcriptional regulator SdiA -
  ACIA69_RS09700 tcyN 1932941..1933693 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACIA69_RS09705 tcyL 1933690..1934358 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  ACIA69_RS09710 dcyD 1934373..1935359 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=954152 ACIA69_RS09680 WP_000611338.1 1930583..1931239(-) (letA) [Escherichia coli strain HS-01]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=954152 ACIA69_RS09680 WP_000611338.1 1930583..1931239(-) (letA) [Escherichia coli strain HS-01]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491