Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACGH52_RS27555 Genome accession   NZ_CP172447
Coordinates   6006247..6008463 (+) Length   738 a.a.
NCBI ID   WP_399943174.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6001247..6013463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS27545 (ACGH52_27545) rpmB 6003984..6004169 (-) 186 WP_003973430.1 50S ribosomal protein L28 -
  ACGH52_RS27550 (ACGH52_27550) - 6004437..6006185 (+) 1749 WP_399943171.1 DAK2 domain-containing protein -
  ACGH52_RS27555 (ACGH52_27555) recG 6006247..6008463 (+) 2217 WP_399943174.1 ATP-dependent DNA helicase RecG Machinery gene
  ACGH52_RS27560 (ACGH52_27560) rsmD 6008519..6009106 (+) 588 WP_059300786.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACGH52_RS27565 (ACGH52_27565) coaD 6009133..6009612 (+) 480 WP_076976499.1 pantetheine-phosphate adenylyltransferase -
  ACGH52_RS27570 (ACGH52_27570) - 6009746..6010888 (+) 1143 WP_210974438.1 cell division initiation protein -
  ACGH52_RS27575 (ACGH52_27575) - 6011033..6011686 (+) 654 WP_059300789.1 DUF177 domain-containing protein -
  ACGH52_RS27580 (ACGH52_27580) rpmF 6011689..6011862 (+) 174 WP_003951102.1 50S ribosomal protein L32 -
  ACGH52_RS27585 (ACGH52_27585) rnc 6011870..6012700 (+) 831 WP_193777418.1 ribonuclease III -
  ACGH52_RS27590 (ACGH52_27590) - 6012795..6013235 (+) 441 WP_238696608.1 hypothetical protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80000.58 Da        Isoelectric Point: 6.4231

>NTDB_id=953935 ACGH52_RS27555 WP_399943174.1 6006247..6008463(+) (recG) [Streptomyces sp. BBFR25]
MDLVPALQEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKELLPGTRAMFSGKVSVFNRRLQLAHPAYELLRGDSEGEESVESWAGA
LIPLYPATAKLESWKLAKAIQTVLPSAREAVDPLPDSLRAGRGLVSLPEALLKIHRPHTKADIEDARARLKWDEAFVLQV
ALARRRHAETQLPAVPRKPRPDGLLTAFDDRLPFTLTDGQQRVSREIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAV
VDAGGQAVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEQATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALI
EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPA
ADKPHFLARAWERVREEVSGGHQAYVVCPRIGDEDDDPKKKAAPRTSPEDDAEKRPPLAVLDIAEQLAKGPLQGLKVEVL
HGRMQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEA
SAARQRLNAVASTRDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARVEAAAVVAADPELTGLPGLR
TALEALLDEDREQYLEKG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=953935 ACGH52_RS27555 WP_399943174.1 6006247..6008463(+) (recG) [Streptomyces sp. BBFR25]
ATGGATCTCGTGCCCGCACTGCAAGAACCCCTGAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTCCTCCACCACTACCCGAGGAGATACGAGGAGCGCGGTCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGGCTGCACACCTTCGCCTCCTCGAAGGCC
CCGCGCGGCAAGGGGCAGCGCCTCGAAGTGACCATCACGGACGGCAGCGGCCGCCTCCAACTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGAACTCCTGCCGGGCACCCGGGCGATGTTCTCGGGCAAGGTCTCCGTCTTCAACCGCCGCC
TGCAACTGGCCCATCCGGCGTACGAGTTGCTGCGCGGCGACTCCGAGGGCGAGGAGTCCGTCGAGTCCTGGGCGGGCGCT
CTCATCCCCCTCTACCCCGCCACCGCCAAGCTGGAGTCCTGGAAGCTCGCCAAGGCGATCCAGACGGTGCTGCCCAGCGC
CCGGGAAGCCGTCGACCCCCTGCCGGACTCCCTGCGCGCGGGCCGGGGCCTGGTCTCCCTGCCCGAGGCCCTCCTCAAGA
TCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGGGCCCGTCTGAAGTGGGACGAGGCCTTCGTCCTCCAGGTC
GCCCTCGCCCGCCGCCGCCACGCCGAGACCCAACTCCCCGCCGTTCCCAGGAAGCCCCGCCCGGACGGCCTGCTCACCGC
CTTCGACGACCGCCTCCCCTTCACCCTCACCGACGGCCAGCAGCGGGTCTCCCGCGAGATCTTCGACGACCTCGCCACCG
ACCACCCGATGCACCGGCTGCTCCAGGGCGAGGTGGGCAGCGGCAAGACCCTGGTCGCCCTGCGCGCCATGCTCGCCGTC
GTCGACGCGGGCGGACAGGCCGTGATGCTGGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGGTCGTCGAGAT
GATGGGCGAGCTGGCCGAGGGCGGCATGCTGGGCGGCGCCGAGCAGGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGG
GCGCCGCCGCCCGCCGGCACGCCCTGCTCGACCTGGCCACCGGCGAGGCGGGCATCGTCATCGGCACCCACGCCCTGATC
GAGGACAAGGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGCGACGC
CCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTCGTCATGACCGCCACGCCCATCCCGCGCACCGTCGCGATGACGG
TCTTCGGCGACCTGGAGACCTCCGTCCTGGACCAGCTCCCGGCCGGCCGGTCCCCGATCGCCAGCCATGTCGTCCCGGCC
GCCGACAAACCGCACTTCCTCGCCCGCGCCTGGGAGCGGGTCCGCGAGGAGGTCTCGGGCGGCCACCAGGCGTACGTCGT
CTGCCCCCGCATCGGCGACGAGGACGACGACCCGAAGAAGAAGGCCGCCCCGCGCACATCGCCGGAGGACGACGCCGAGA
AGCGCCCCCCGCTCGCCGTGCTCGACATCGCCGAGCAGCTCGCCAAGGGCCCGCTCCAGGGCCTCAAGGTGGAGGTGCTG
CACGGCAGGATGCAGCCCGACGACAAGGACGCGGTGATGCGCCGCTTCGCCGCCGGGGAGACCGACGTCCTGGTCGCCAC
CACCGTCATCGAGGTCGGCGTGAACGTCCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCC
AGCTGCACCAGCTGCGCGGCCGGGTCGGCCGCGGTTCCGCTCCCGGCCTGTGCCTGCTGGTCAGCGAGATGCCCGAGGCG
AGCGCGGCCCGGCAGCGGCTGAACGCGGTCGCGAGCACCCGCGACGGCTTCGAGCTGTCCCGCATCGACCTCGAACAGCG
CCGAGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGCCCGCACCTCCCTGCGCGTCCTCGCCGTCATCGAGGACGAGG
AGATCATCGCGGAGGCCAGAGTGGAGGCCGCGGCCGTCGTCGCCGCCGACCCGGAGCTGACCGGTCTGCCGGGGCTGCGC
ACGGCCCTCGAGGCGCTGCTGGACGAGGACCGGGAGCAGTATCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(298-450)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(653-714)

Helicase conserved C-terminal domain (Helicase_C)

(550-625)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.857

94.851

0.369
  recG Bacillus subtilis subsp. subtilis str. 168

38.197

94.715

0.362