Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACGH52_RS21500 Genome accession   NZ_CP172447
Coordinates   4709910..4711319 (-) Length   469 a.a.
NCBI ID   WP_121701960.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4704910..4716319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH52_RS21480 (ACGH52_21480) - 4706304..4706975 (+) 672 WP_059302187.1 response regulator transcription factor -
  ACGH52_RS21485 (ACGH52_21485) - 4706994..4707647 (-) 654 WP_193777596.1 phosphatase PAP2 family protein -
  ACGH52_RS21490 (ACGH52_21490) - 4707821..4708657 (+) 837 WP_399941553.1 hypothetical protein -
  ACGH52_RS21495 (ACGH52_21495) disA 4708704..4709828 (-) 1125 WP_030184212.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACGH52_RS21500 (ACGH52_21500) radA/sms 4709910..4711319 (-) 1410 WP_121701960.1 DNA repair protein RadA Machinery gene
  ACGH52_RS21505 (ACGH52_21505) - 4711902..4713704 (+) 1803 WP_399941558.1 hypothetical protein -
  ACGH52_RS21510 (ACGH52_21510) - 4713731..4714555 (-) 825 WP_210978158.1 hypothetical protein -
  ACGH52_RS21515 (ACGH52_21515) - 4714627..4715559 (+) 933 WP_059302147.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49817.90 Da        Isoelectric Point: 7.7531

>NTDB_id=953923 ACGH52_RS21500 WP_121701960.1 4709910..4711319(-) (radA/sms) [Streptomyces sp. BBFR25]
MAARTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADMGDALRVLPRSRRREAPREQEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=953923 ACGH52_RS21500 WP_121701960.1 4709910..4711319(-) (radA/sms) [Streptomyces sp. BBFR25]
ATGGCTGCCCGTACGAAGTCCGCCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGTTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGTACGACCACCCCGGGGC
GCGTGACCACGTCCGCGGTGCCGATCGGGCAGGTCGACGGGCGGCAGGCGACCGCCCGCTCCACCGGTGTGCCCGAGCTG
GACCGGGTGCTCGGGGGCGGGCTGGTGCCCGGGGCCGTGGTGCTGGTCGCCGGGGAGCCGGGCGTCGGGAAGTCCACGCT
GCTGCTGGACGTCGCGGCCAAGGCGGCGAGCGACGAGCACCGGACGCTCTATGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCATCTGTATCTCGCCGCCGAGACGGACCTCGCGGCGGTGCTC
GGACATCTGGACGCCGTCAAGCCGTCGCTGCTGATCCTGGACTCCGTGCAGACCGTGGCCTCGCCCGAGATCGACGGCGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGTGCGCTGATCCGCGCCTCCAAGGAGCGAGGCATGTCCACCCTGC
TCGTGGGTCACGTCACGAAGGACGGGGCCATCGCGGGGCCCCGGCTGCTGGAGCACCTCGTGGACGTCGTGCTGCATTTC
GAGGGCGACCGGCATGCGCGGCTGAGGCTGGTGCGGGGTGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGGATCACGGGGCTCGCCGATCCCAGCGGGCTGTTCCTCACGCGGCGGGCCGAGCCGGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAGGGGCGTCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTGGACTCGCAGATT
CCGTCGCCCCGGCGCACGACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGGGGGCG
CATCAGTGCGCTGGGGAAGCGGGACATTTACAGTGCGACGGTGGGGGGCGTGAAGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTGGCCCTGGCCAGTGCGGCCAGTGACACTCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTCGGTCTC
GCCGGAGAGGTGAGACGGGTCACGGGGGTGCAGCGCAGGCTCTCCGAAGCGCACCGGCTGGGCTTCACGCACGCCCTGGT
ACCGGCCGATCCGGGCAGGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGAGCAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus pneumoniae D39

42.889

95.949

0.412
  radA Streptococcus pneumoniae R6

42.889

95.949

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.949

0.412
  radA Streptococcus pneumoniae TIGR4

42.889

95.949

0.412
  radA Streptococcus mitis SK321

44.366

90.832

0.403
  radA Streptococcus mitis NCTC 12261

44.366

90.832

0.403