Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   AAA980_RS06025 Genome accession   NZ_AP028604
Coordinates   1170929..1172278 (-) Length   449 a.a.
NCBI ID   WP_000886210.1    Uniprot ID   Q8DPL8
Organism   Streptococcus pneumoniae strain Pne3     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1165929..1177278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA980_RS06000 (TKY182805_11880) - 1167464..1168450 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  AAA980_RS06005 (TKY182805_11890) - 1168706..1169482 (-) 777 WP_000731138.1 ion channel -
  AAA980_RS06010 (TKY182805_11900) - 1169529..1169783 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAA980_RS06015 (TKY182805_11910) - 1169785..1170027 (-) 243 WP_000208080.1 DUF6290 family protein -
  AAA980_RS06020 (TKY182805_11920) vicX 1170118..1170927 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  AAA980_RS06025 (TKY182805_11930) micB 1170929..1172278 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AAA980_RS06030 (TKY182805_11940) yycF 1172271..1172975 (-) 705 WP_000722076.1 response regulator YycF -
  AAA980_RS06035 (TKY182805_11950) mutY 1173030..1174205 (-) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  AAA980_RS06040 - 1174302..1174427 (+) 126 WP_001818232.1 hypothetical protein -
  AAA980_RS06045 (TKY182805_11960) - 1174533..1176203 (-) 1671 WP_000845279.1 formate--tetrahydrofolate ligase -
  AAA980_RS06050 (TKY182805_11970) coaB 1176433..1177122 (+) 690 WP_000699499.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51712.42 Da        Isoelectric Point: 4.9706

>NTDB_id=95367 AAA980_RS06025 WP_000886210.1 1170929..1172278(-) (micB) [Streptococcus pneumoniae strain Pne3]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQINQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=95367 AAA980_RS06025 WP_000886210.1 1170929..1172278(-) (micB) [Streptococcus pneumoniae strain Pne3]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCAGTTGAAGCAAATCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGGGTCTGAAATCACCAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACCAACCGTCGGGGTCAGATTATCATGATTAACGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGCGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAAACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCATCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAAAAAAAATATGAGTTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTGCTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterProScan.

PAS fold (PAS)

(98-198)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DPL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.777

100

0.998
  vicK Streptococcus mutans UA159

69.9

89.532

0.626

Multiple sequence alignment