Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   Q3A86_RS19945 Genome accession   NZ_CP172414
Coordinates   4642233..4643642 (-) Length   469 a.a.
NCBI ID   WP_224308721.1    Uniprot ID   -
Organism   Streptomyces sp. NBUA17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4637233..4648642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3A86_RS19920 (Q3A86_19920) - 4637766..4638305 (-) 540 WP_031047501.1 SigE family RNA polymerase sigma factor -
  Q3A86_RS19925 (Q3A86_19925) - 4638592..4639542 (-) 951 WP_399139707.1 A/G-specific adenine glycosylase -
  Q3A86_RS19930 (Q3A86_19930) - 4639751..4639981 (-) 231 Protein_3921 phosphatase PAP2 family protein -
  Q3A86_RS19935 (Q3A86_19935) - 4640087..4640959 (+) 873 WP_359925980.1 hypothetical protein -
  Q3A86_RS19940 (Q3A86_19940) disA 4641027..4642151 (-) 1125 WP_031047520.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  Q3A86_RS19945 (Q3A86_19945) radA/sms 4642233..4643642 (-) 1410 WP_224308721.1 DNA repair protein RadA Machinery gene
  Q3A86_RS19950 (Q3A86_19950) - 4643898..4645714 (+) 1817 Protein_3925 hypothetical protein -
  Q3A86_RS19955 (Q3A86_19955) - 4645767..4646609 (-) 843 WP_031047530.1 hypothetical protein -
  Q3A86_RS19960 (Q3A86_19960) - 4646682..4647614 (+) 933 WP_194276581.1 Ppx/GppA phosphatase family protein -
  Q3A86_RS19965 (Q3A86_19965) - 4647728..4648603 (+) 876 WP_359925992.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49878.04 Da        Isoelectric Point: 7.7393

>NTDB_id=953523 Q3A86_RS19945 WP_224308721.1 4642233..4643642(-) (radA/sms) [Streptomyces sp. NBUA17]
MAARTKSTKERPSFRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTTSALPIGQVDGRQATARPTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEEHKTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGRVPDGMKVLEVADMGDALRVLPRSRRREAPREEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=953523 Q3A86_RS19945 WP_224308721.1 4642233..4643642(-) (radA/sms) [Streptomyces sp. NBUA17]
ATGGCTGCCCGTACGAAGTCCACCAAGGAACGGCCGTCCTTCCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGTACGACGGCTCCGGGAC
GGGTCACCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGACGGCAGGCGACCGCCCGTCCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGACTGGTGCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCCGGGGTCGGCAAGTCGACGCT
GCTGCTCGACGTGGCGGCCAAGTCGGCCAGCGAGGAGCACAAGACGCTCTACGTCACCGGTGAGGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCCGACCGGATCAAGGCCATCGACGACCATCTGTACCTGGCGGCCGAGACCGACCTCGCGGCGGTGCTC
GGGCACCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTCGACTCCGTGCAGACGGTGGCCTCGCCCGAGATCGACGGTGC
CCCGGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCCACTCTCC
TCGTGGGCCACGTCACCAAGGACGGTGCCATCGCCGGACCCCGGCTCCTGGAGCACCTCGTCGACGTCGTACTGCACTTC
GAGGGCGACCGGCACGCGCGGCTGCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGCACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCAGCGGACTGTTCCTCACCCGGCGTGCCGAGCCCGTGCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGGCGTCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCTCCCCGGCGCACCACCTCCGGTCTGGAGACGTCGCGGGTCTCCATGATGCTGGCGGTCCTCGAGCAGCGCGGCCG
CATCAGCGCCCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGGGTGAGGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTCGCGCTCGCCCTGGCGAGTGCCGCAAGTGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGTCTC
GCCGGAGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGACTCTCCGAGGCACACCGCCTGGGCTTCACACACGCCCTGGT
ACCGAGCGATCCGGGGCGGGTCCCGGACGGCATGAAGGTCCTGGAAGTCGCGGACATGGGGGACGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCACGGGAGGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus pneumoniae D39

42.984

95.736

0.412
  radA Streptococcus pneumoniae R6

42.984

95.736

0.412
  radA Streptococcus pneumoniae Rx1

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.984

95.736

0.412
  radA Streptococcus mitis NCTC 12261

44.471

90.618

0.403
  radA Streptococcus mitis SK321

44.471

90.618

0.403