Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP52_RS07485 Genome accession   NZ_CP148252
Coordinates   1432415..1433365 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain Z1323CCJ0007     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1427415..1438365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP52_RS07460 (WHP52_07460) - 1427764..1428786 (-) 1023 WP_220551444.1 hypothetical protein -
  WHP52_RS07465 (WHP52_07465) - 1428857..1429630 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  WHP52_RS07470 (WHP52_07470) wlaTB 1429623..1430579 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  WHP52_RS07475 (WHP52_07475) wlaTC 1430576..1431535 (+) 960 WP_218985767.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  WHP52_RS07480 (WHP52_07480) waaV 1431538..1432356 (-) 819 WP_002877115.1 glycosyltransferase family 2 protein -
  WHP52_RS07485 (WHP52_07485) waaF 1432415..1433365 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP52_RS07490 (WHP52_07490) - 1433417..1434916 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  WHP52_RS07495 (WHP52_07495) - 1435064..1436041 (+) 978 WP_002866168.1 hypothetical protein -
  WHP52_RS07500 (WHP52_07500) gmhA 1436045..1436605 (-) 561 WP_087695966.1 D-sedoheptulose 7-phosphate isomerase -
  WHP52_RS07505 (WHP52_07505) rfaE1 1436602..1437987 (-) 1386 WP_002890180.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=953416 WHP52_RS07485 WP_002866164.1 1432415..1433365(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0007]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=953416 WHP52_RS07485 WP_002866164.1 1432415..1433365(+) (waaF) [Campylobacter jejuni strain Z1323CCJ0007]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934