Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   WHP78_RS03995 Genome accession   NZ_CP148250
Coordinates   764187..764489 (-) Length   100 a.a.
NCBI ID   WP_002877750.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 759187..769489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP78_RS03960 (WHP78_03960) - 759600..760361 (+) 762 WP_002856328.1 ATP-binding protein -
  WHP78_RS03965 (WHP78_03965) - 760358..761044 (+) 687 WP_002877763.1 endonuclease III domain-containing protein -
  WHP78_RS03970 (WHP78_03970) thiD 761041..761853 (+) 813 WP_002877760.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  WHP78_RS03975 (WHP78_03975) thiE 761843..762475 (+) 633 WP_002877759.1 thiamine phosphate synthase -
  WHP78_RS03980 (WHP78_03980) hemD 762453..763082 (+) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  WHP78_RS03985 (WHP78_03985) - 763079..763531 (-) 453 WP_002877757.1 hypothetical protein -
  WHP78_RS03990 (WHP78_03990) - 763528..764190 (-) 663 WP_002877751.1 hypothetical protein -
  WHP78_RS03995 (WHP78_03995) ctsT 764187..764489 (-) 303 WP_002877750.1 hypothetical protein Machinery gene
  WHP78_RS04000 (WHP78_04000) proC 764486..765217 (-) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP78_RS04005 (WHP78_04005) fliW 765217..765606 (-) 390 WP_002877749.1 flagellar assembly protein FliW -
  WHP78_RS04010 (WHP78_04010) - 765767..766414 (+) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  WHP78_RS04015 (WHP78_04015) lon 766431..768806 (+) 2376 WP_002868636.1 endopeptidase La -
  WHP78_RS04020 (WHP78_04020) rpsR 768867..769127 (-) 261 WP_002853032.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12138.20 Da        Isoelectric Point: 7.0039

>NTDB_id=953383 WHP78_RS03995 WP_002877750.1 764187..764489(-) (ctsT) [Campylobacter jejuni strain Z1323CCJ0008]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=953383 WHP78_RS03995 WP_002877750.1 764187..764489(-) (ctsT) [Campylobacter jejuni strain Z1323CCJ0008]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98