Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP78_RS01825 Genome accession   NZ_CP148250
Coordinates   343646..344254 (+) Length   202 a.a.
NCBI ID   WP_002862129.1    Uniprot ID   A0A1S2U519
Organism   Campylobacter jejuni strain Z1323CCJ0008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338646..349254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP78_RS01815 (WHP78_01815) ctsR 341952..342263 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP78_RS01820 (WHP78_01820) ctsD 342241..343653 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP78_RS01825 (WHP78_01825) ctsP 343646..344254 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP78_RS01830 (WHP78_01830) ctsX 344258..344845 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP78_RS01835 (WHP78_01835) ctsE 344835..346394 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  WHP78_RS01840 (WHP78_01840) ctsF 346391..347572 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP78_RS01845 (WHP78_01845) - 347565..348329 (-) 765 WP_002867032.1 TSUP family transporter -
  WHP78_RS01850 (WHP78_01850) - 348333..349097 (-) 765 WP_002877433.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23743.73 Da        Isoelectric Point: 9.8159

>NTDB_id=953369 WHP78_RS01825 WP_002862129.1 343646..344254(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0008]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=953369 WHP78_RS01825 WP_002862129.1 343646..344254(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0008]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTAGGAATGTATGATTATGCAATGCTAGAAAGCATTAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAATAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2U519

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99