Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP78_RS01840 Genome accession   NZ_CP148250
Coordinates   346391..347572 (+) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain Z1323CCJ0008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341391..352572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP78_RS01815 (WHP78_01815) ctsR 341952..342263 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP78_RS01820 (WHP78_01820) ctsD 342241..343653 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP78_RS01825 (WHP78_01825) ctsP 343646..344254 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP78_RS01830 (WHP78_01830) ctsX 344258..344845 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP78_RS01835 (WHP78_01835) ctsE 344835..346394 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  WHP78_RS01840 (WHP78_01840) ctsF 346391..347572 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP78_RS01845 (WHP78_01845) - 347565..348329 (-) 765 WP_002867032.1 TSUP family transporter -
  WHP78_RS01850 (WHP78_01850) - 348333..349097 (-) 765 WP_002877433.1 TIGR02757 family protein -
  WHP78_RS01855 (WHP78_01855) flgK 349114..350940 (-) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  WHP78_RS01860 (WHP78_01860) - 350950..351384 (-) 435 WP_002826016.1 flagellar protein FlgN -
  WHP78_RS01865 (WHP78_01865) flgM 351429..351626 (-) 198 WP_002877432.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP78_RS01870 (WHP78_01870) - 351689..352030 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=953372 WHP78_RS01840 WP_002851165.1 346391..347572(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0008]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=953372 WHP78_RS01840 WP_002851165.1 346391..347572(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0008]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99