Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP78_RS01815 Genome accession   NZ_CP148250
Coordinates   341952..342263 (+) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336952..347263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP78_RS01805 (WHP78_01805) - 337634..338275 (+) 642 WP_002867040.1 HAD family hydrolase -
  WHP78_RS01810 (WHP78_01810) nifJ 338368..341928 (+) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP78_RS01815 (WHP78_01815) ctsR 341952..342263 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP78_RS01820 (WHP78_01820) ctsD 342241..343653 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP78_RS01825 (WHP78_01825) ctsP 343646..344254 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP78_RS01830 (WHP78_01830) ctsX 344258..344845 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP78_RS01835 (WHP78_01835) ctsE 344835..346394 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=953367 WHP78_RS01815 WP_002862131.1 341952..342263(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0008]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953367 WHP78_RS01815 WP_002862131.1 341952..342263(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0008]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99