Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QMM10_RS01870 Genome accession   NZ_AP025938
Coordinates   362418..363107 (+) Length   229 a.a.
NCBI ID   WP_000518010.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701057     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 357418..368107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM10_RS01845 (PC1044_03510) gpsB 357527..357856 (+) 330 WP_000146522.1 cell division regulator GpsB -
  QMM10_RS01855 (PC1044_03520) - 358342..359499 (+) 1158 WP_000711393.1 class I SAM-dependent RNA methyltransferase -
  QMM10_RS01860 (PC1044_03530) mapZ 359512..360906 (+) 1395 WP_050207249.1 mid-cell-anchored protein MapZ -
  QMM10_RS01865 (PC1044_03540) gndA 360982..362406 (+) 1425 WP_000158781.1 NADP-dependent phosphogluconate dehydrogenase -
  QMM10_RS01870 (PC1044_03550) covR 362418..363107 (+) 690 WP_000518010.1 response regulator transcription factor Regulator
  QMM10_RS01875 (PC1044_03560) cbpC 363205..364227 (+) 1023 WP_044727648.1 choline-binding protein CbpC -
  QMM10_RS01880 (PC1044_03570) cbpJ 364246..365244 (+) 999 WP_050207248.1 choline-binding protein CbpJ -
  QMM10_RS01885 - 365362..366594 (-) 1233 WP_050207247.1 MFS transporter -
  QMM10_RS01890 (PC1044_03600) - 366637..367224 (-) 588 WP_016397727.1 lanthionine synthetase LanC family protein -
  QMM10_RS01895 - 367124..367513 (-) 390 WP_016397728.1 lanthionine synthetase LanC family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26862.16 Da        Isoelectric Point: 6.9836

>NTDB_id=95336 QMM10_RS01870 WP_000518010.1 362418..363107(+) (covR) [Streptococcus pneumoniae strain PZ900701057]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASVIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTIQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=95336 QMM10_RS01870 WP_000518010.1 362418..363107(+) (covR) [Streptococcus pneumoniae strain PZ900701057]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAACG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGCCGAACTAAACCTGCCTCAGTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACCCGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGCCAAA
AAAGCTACATTAAAACCGTGCGTGGTGTTGGATATACCATTCAAGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.696

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.087

100

0.463

Multiple sequence alignment