Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WHP53_RS04590 Genome accession   NZ_CP148242
Coordinates   891578..892351 (-) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0010     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 886578..897351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP53_RS04560 (WHP53_04565) aspS 886762..888513 (+) 1752 WP_012006668.1 aspartate--tRNA ligase -
  WHP53_RS04565 (WHP53_04570) adk 888510..889088 (+) 579 WP_002855137.1 adenylate kinase -
  WHP53_RS04570 (WHP53_04575) ppa 889098..889616 (+) 519 WP_002855031.1 inorganic diphosphatase -
  WHP53_RS04575 (WHP53_04580) msrA 889657..890154 (+) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHP53_RS04580 (WHP53_04585) - 890330..891169 (-) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHP53_RS04585 (WHP53_04590) ruvX 891198..891581 (-) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  WHP53_RS04590 (WHP53_04595) dprA 891578..892351 (-) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  WHP53_RS04595 (WHP53_04600) - 892341..893423 (-) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  WHP53_RS04600 (WHP53_04605) ilvC 893427..894449 (-) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  WHP53_RS04605 (WHP53_04610) - 894568..896502 (+) 1935 WP_002876691.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=953329 WHP53_RS04590 WP_002866495.1 891578..892351(-) (dprA) [Campylobacter jejuni strain Z1323CCJ0010]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=953329 WHP53_RS04590 WP_002866495.1 891578..892351(-) (dprA) [Campylobacter jejuni strain Z1323CCJ0010]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459