Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP53_RS00840 Genome accession   NZ_CP148242
Coordinates   168116..168631 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain Z1323CCJ0010     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163116..173631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP53_RS00815 (WHP53_00815) - 163576..163914 (+) 339 WP_002852397.1 hypothetical protein -
  WHP53_RS00820 (WHP53_00820) cdsA 163923..164648 (+) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  WHP53_RS00825 (WHP53_00825) dxr 164645..165715 (+) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP53_RS00830 (WHP53_00830) - 165717..167111 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP53_RS00835 (WHP53_00835) tsaD 167108..168115 (+) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP53_RS00840 (WHP53_00840) ctsG 168116..168631 (+) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP53_RS00845 (WHP53_00845) - 168631..169873 (+) 1243 Protein_165 DUF2920 family protein -
  WHP53_RS00850 (WHP53_00850) - 169885..171705 (+) 1821 WP_338878162.1 motility associated factor glycosyltransferase family protein -
  WHP53_RS00855 (WHP53_00855) - 171705..173522 (+) 1818 WP_338877574.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=953318 WHP53_RS00840 WP_002799196.1 168116..168631(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0010]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=953318 WHP53_RS00840 WP_002799196.1 168116..168631(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0010]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942