Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP53_RS00275 Genome accession   NZ_CP148242
Coordinates   52547..53134 (+) Length   195 a.a.
NCBI ID   WP_002867036.1    Uniprot ID   A0A5T1DZF0
Organism   Campylobacter jejuni strain Z1323CCJ0010     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47547..58134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP53_RS00260 (WHP53_00260) ctsR 50241..50552 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP53_RS00265 (WHP53_00265) ctsD 50530..51942 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP53_RS00270 (WHP53_00270) ctsP 51935..52543 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP53_RS00275 (WHP53_00275) ctsX 52547..53134 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP53_RS00280 (WHP53_00280) ctsE 53124..54683 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  WHP53_RS00285 (WHP53_00285) ctsF 54680..55861 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP53_RS00290 (WHP53_00290) - 55854..56618 (-) 765 WP_002867032.1 TSUP family transporter -
  WHP53_RS00295 (WHP53_00295) - 56622..57386 (-) 765 WP_002877433.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23375.43 Da        Isoelectric Point: 9.8409

>NTDB_id=953312 WHP53_RS00275 WP_002867036.1 52547..53134(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0010]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWTLKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=953312 WHP53_RS00275 WP_002867036.1 52547..53134(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0010]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACACATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCTTTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGACTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1DZF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99