Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP53_RS00260 Genome accession   NZ_CP148242
Coordinates   50241..50552 (+) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0010     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 45241..55552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP53_RS00250 (WHP53_00250) - 45923..46564 (+) 642 WP_002867040.1 HAD family hydrolase -
  WHP53_RS00255 (WHP53_00255) nifJ 46657..50217 (+) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP53_RS00260 (WHP53_00260) ctsR 50241..50552 (+) 312 WP_002862131.1 hypothetical protein Machinery gene
  WHP53_RS00265 (WHP53_00265) ctsD 50530..51942 (+) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP53_RS00270 (WHP53_00270) ctsP 51935..52543 (+) 609 WP_002862129.1 ATP-binding protein Machinery gene
  WHP53_RS00275 (WHP53_00275) ctsX 52547..53134 (+) 588 WP_002867036.1 hypothetical protein Machinery gene
  WHP53_RS00280 (WHP53_00280) ctsE 53124..54683 (+) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=953309 WHP53_RS00260 WP_002862131.1 50241..50552(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0010]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953309 WHP53_RS00260 WP_002862131.1 50241..50552(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0010]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99