Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WHP38_RS06040 Genome accession   NZ_CP148240
Coordinates   1163049..1163699 (+) Length   216 a.a.
NCBI ID   WP_002866466.1    Uniprot ID   A0AAN4A9Z1
Organism   Campylobacter jejuni strain Z1323CCJ0011     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158049..1168699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP38_RS06020 (WHP38_06020) - 1158923..1160365 (-) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -
  WHP38_RS06025 (WHP38_06025) fbaA 1160460..1161524 (-) 1065 WP_002866470.1 class II fructose-bisphosphate aldolase -
  WHP38_RS06030 (WHP38_06030) peb4 1161524..1162345 (-) 822 WP_002876664.1 peptidylprolyl isomerase PEB4 -
  WHP38_RS06035 (WHP38_06035) nth 1162426..1163052 (+) 627 WP_002866467.1 endonuclease III -
  WHP38_RS06040 (WHP38_06040) CJE0566 1163049..1163699 (+) 651 WP_002866466.1 DNA/RNA non-specific endonuclease Regulator
  WHP38_RS06045 (WHP38_06045) - 1163710..1164342 (+) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  WHP38_RS06050 (WHP38_06050) - 1164401..1164841 (+) 441 WP_002866465.1 EexN family lipoprotein -
  WHP38_RS06055 (WHP38_06055) - 1164832..1165053 (+) 222 WP_072238629.1 EexN family lipoprotein -
  WHP38_RS06060 (WHP38_06060) cmoA 1165043..1165753 (-) 711 WP_072238630.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  WHP38_RS06065 (WHP38_06065) ribF 1165740..1166594 (-) 855 WP_002876662.1 bifunctional riboflavin kinase/FAD synthetase -
  WHP38_RS06070 (WHP38_06070) tlyA 1166560..1167321 (-) 762 WP_002866462.1 TlyA family RNA methyltransferase -
  WHP38_RS06075 (WHP38_06075) - 1167318..1168322 (-) 1005 WP_012006666.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25450.22 Da        Isoelectric Point: 9.7361

>NTDB_id=953304 WHP38_RS06040 WP_002866466.1 1163049..1163699(+) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0011]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=953304 WHP38_RS06040 WP_002866466.1 1163049..1163699(+) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0011]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63