Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ38_RS07260 Genome accession   NZ_CP148236
Coordinates   1423252..1423563 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain Z1323CCJ0019     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418252..1428563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ38_RS07240 (WHQ38_07240) ctsE 1419121..1420680 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHQ38_RS07245 (WHQ38_07245) ctsX 1420670..1421257 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ38_RS07250 (WHQ38_07250) ctsP 1421261..1421869 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ38_RS07255 (WHQ38_07255) ctsD 1421862..1423274 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ38_RS07260 (WHQ38_07260) ctsR 1423252..1423563 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHQ38_RS07265 (WHQ38_07265) nifJ 1423587..1427147 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ38_RS07270 (WHQ38_07270) - 1427240..1427881 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=953252 WHQ38_RS07260 WP_015016496.1 1423252..1423563(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0019]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=953252 WHQ38_RS07260 WP_015016496.1 1423252..1423563(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0019]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99