Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   ACH6FA_RS07455 Genome accession   NZ_CP172396
Coordinates   1449585..1450181 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH505     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444585..1455181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS07435 (ACH6FA_07435) - 1445339..1446103 (+) 765 WP_002781156.1 TIGR02757 family protein -
  ACH6FA_RS07440 (ACH6FA_07440) - 1446107..1446871 (+) 765 WP_002781157.1 TSUP family transporter -
  ACH6FA_RS07445 (ACH6FA_07445) ctsF 1446868..1448043 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  ACH6FA_RS07450 (ACH6FA_07450) ctsE 1448030..1449592 (-) 1563 WP_057044830.1 GspE/PulE family protein Machinery gene
  ACH6FA_RS07455 (ACH6FA_07455) ctsX 1449585..1450181 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  ACH6FA_RS07460 (ACH6FA_07460) ctsP 1450178..1450774 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  ACH6FA_RS07465 (ACH6FA_07465) ctsD 1450767..1452185 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FA_RS07470 (ACH6FA_07470) ctsR 1452163..1452474 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=953250 ACH6FA_RS07455 WP_002779313.1 1449585..1450181(-) (ctsX) [Campylobacter coli strain YH505]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=953250 ACH6FA_RS07455 WP_002779313.1 1449585..1450181(-) (ctsX) [Campylobacter coli strain YH505]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434