Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACH6FA_RS06035 Genome accession   NZ_CP172396
Coordinates   1162491..1163357 (-) Length   288 a.a.
NCBI ID   WP_052784968.1    Uniprot ID   -
Organism   Campylobacter coli strain YH505     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157491..1168357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS06010 (ACH6FA_06010) radA/sms 1157971..1159311 (-) 1341 WP_002799208.1 DNA repair protein RadA Machinery gene
  ACH6FA_RS06015 (ACH6FA_06015) - 1159447..1160295 (+) 849 WP_057044614.1 carbon-nitrogen hydrolase family protein -
  ACH6FA_RS06020 (ACH6FA_06020) - 1160298..1161179 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  ACH6FA_RS06025 (ACH6FA_06025) - 1161221..1161556 (+) 336 WP_002777373.1 hypothetical protein -
  ACH6FA_RS06030 (ACH6FA_06030) - 1161549..1162494 (+) 946 Protein_1166 CobW family GTP-binding protein -
  ACH6FA_RS06035 (ACH6FA_06035) pilA 1162491..1163357 (-) 867 WP_052784968.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FA_RS06040 (ACH6FA_06040) - 1163357..1163914 (-) 558 WP_057044615.1 TlpA disulfide reductase family protein -
  ACH6FA_RS06045 (ACH6FA_06045) - 1163996..1164622 (+) 627 WP_002825279.1 5-formyltetrahydrofolate cyclo-ligase -
  ACH6FA_RS06050 (ACH6FA_06050) rny 1164543..1166096 (+) 1554 WP_002825278.1 ribonuclease Y -
  ACH6FA_RS06055 (ACH6FA_06055) - 1166107..1166664 (+) 558 WP_002781270.1 DedA family protein -
  ACH6FA_RS06060 (ACH6FA_06060) - 1166664..1167923 (+) 1260 WP_025399104.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31846.88 Da        Isoelectric Point: 5.1228

>NTDB_id=953238 ACH6FA_RS06035 WP_052784968.1 1162491..1163357(-) (pilA) [Campylobacter coli strain YH505]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNASILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=953238 ACH6FA_RS06035 WP_052784968.1 1162491..1163357(-) (pilA) [Campylobacter coli strain YH505]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
TAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCATATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTATGAAAATAAAGAATTTTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCGGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTGGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGACACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAACT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGTACTCAAG
GCAATGCCAGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACCAAACTTGATGGC
ACAGCAAAGGGTGGAGCACTTTTTAGTATAGCGCGCGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAGTTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444