Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACH6FA_RS06010 Genome accession   NZ_CP172396
Coordinates   1157971..1159311 (-) Length   446 a.a.
NCBI ID   WP_002799208.1    Uniprot ID   -
Organism   Campylobacter coli strain YH505     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1152971..1164311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS05985 (ACH6FA_05985) - 1153015..1153785 (+) 771 WP_052784132.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  ACH6FA_RS05990 (ACH6FA_05990) metE 1153808..1156072 (+) 2265 WP_025399101.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ACH6FA_RS05995 (ACH6FA_05995) metF 1156082..1156930 (+) 849 WP_025399102.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACH6FA_RS06000 (ACH6FA_06000) - 1156940..1157140 (-) 201 WP_002777366.1 hypothetical protein -
  ACH6FA_RS06005 (ACH6FA_06005) - 1157137..1157817 (-) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  ACH6FA_RS06010 (ACH6FA_06010) radA/sms 1157971..1159311 (-) 1341 WP_002799208.1 DNA repair protein RadA Machinery gene
  ACH6FA_RS06015 (ACH6FA_06015) - 1159447..1160295 (+) 849 WP_057044614.1 carbon-nitrogen hydrolase family protein -
  ACH6FA_RS06020 (ACH6FA_06020) - 1160298..1161179 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  ACH6FA_RS06025 (ACH6FA_06025) - 1161221..1161556 (+) 336 WP_002777373.1 hypothetical protein -
  ACH6FA_RS06030 (ACH6FA_06030) - 1161549..1162494 (+) 946 Protein_1166 CobW family GTP-binding protein -
  ACH6FA_RS06035 (ACH6FA_06035) pilA 1162491..1163357 (-) 867 WP_052784968.1 signal recognition particle-docking protein FtsY Machinery gene
  ACH6FA_RS06040 (ACH6FA_06040) - 1163357..1163914 (-) 558 WP_057044615.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49170.09 Da        Isoelectric Point: 6.9145

>NTDB_id=953237 ACH6FA_RS06010 WP_002799208.1 1157971..1159311(-) (radA/sms) [Campylobacter coli strain YH505]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTFKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=953237 ACH6FA_RS06010 WP_002799208.1 1157971..1159311(-) (radA/sms) [Campylobacter coli strain YH505]
ATGGCTAAAAATAAAATTCTTTTTGAATGTCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTGGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGTGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAACAAAATTGCTTCAGCGGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAACATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTAGGAATTTTTGAAAT
GACTTTTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGAGTGAATGAAACTGCAGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGTCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACTCGTTTAAAAGAAGCCAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGACTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43