Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FA_RS05350 Genome accession   NZ_CP172396
Coordinates   1029997..1030545 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YH505     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1024997..1035545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS05325 (ACH6FA_05325) rseP 1025105..1026211 (+) 1107 WP_042962331.1 RIP metalloprotease RseP -
  ACH6FA_RS05330 (ACH6FA_05330) - 1026204..1027064 (+) 861 WP_057044710.1 VirK family antimicrobial peptide resistance protein -
  ACH6FA_RS05335 (ACH6FA_05335) - 1027057..1028058 (-) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  ACH6FA_RS05340 (ACH6FA_05340) - 1028058..1029330 (-) 1273 Protein_1028 MFS transporter -
  ACH6FA_RS05345 (ACH6FA_05345) rpsF 1029611..1029988 (+) 378 WP_002794143.1 30S ribosomal protein S6 -
  ACH6FA_RS05350 (ACH6FA_05350) ssb 1029997..1030545 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  ACH6FA_RS05355 (ACH6FA_05355) rpsR 1030556..1030816 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6FA_RS05360 (ACH6FA_05360) lon 1030873..1033248 (-) 2376 WP_057044711.1 endopeptidase La -
  ACH6FA_RS05365 (ACH6FA_05365) - 1033264..1033911 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  ACH6FA_RS05370 (ACH6FA_05370) fliW 1034075..1034464 (+) 390 WP_057044712.1 flagellar assembly protein FliW -
  ACH6FA_RS05375 (ACH6FA_05375) proC 1034464..1035201 (+) 738 WP_053875494.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FA_RS05380 (ACH6FA_05380) ctsT 1035198..1035503 (+) 306 WP_025399042.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=953230 ACH6FA_RS05350 WP_002777084.1 1029997..1030545(+) (ssb) [Campylobacter coli strain YH505]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=953230 ACH6FA_RS05350 WP_002777084.1 1029997..1030545(+) (ssb) [Campylobacter coli strain YH505]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379