Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   ACH6FA_RS05380 Genome accession   NZ_CP172396
Coordinates   1035198..1035503 (+) Length   101 a.a.
NCBI ID   WP_025399042.1    Uniprot ID   -
Organism   Campylobacter coli strain YH505     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1030198..1040503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS05355 (ACH6FA_05355) rpsR 1030556..1030816 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  ACH6FA_RS05360 (ACH6FA_05360) lon 1030873..1033248 (-) 2376 WP_057044711.1 endopeptidase La -
  ACH6FA_RS05365 (ACH6FA_05365) - 1033264..1033911 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  ACH6FA_RS05370 (ACH6FA_05370) fliW 1034075..1034464 (+) 390 WP_057044712.1 flagellar assembly protein FliW -
  ACH6FA_RS05375 (ACH6FA_05375) proC 1034464..1035201 (+) 738 WP_053875494.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FA_RS05380 (ACH6FA_05380) ctsT 1035198..1035503 (+) 306 WP_025399042.1 hypothetical protein Machinery gene
  ACH6FA_RS05385 (ACH6FA_05385) - 1035496..1036164 (+) 669 WP_238504941.1 hypothetical protein -
  ACH6FA_RS05390 (ACH6FA_05390) - 1036161..1036613 (+) 453 WP_002777117.1 hypothetical protein -
  ACH6FA_RS05395 (ACH6FA_05395) - 1036606..1037235 (-) 630 WP_238504945.1 uroporphyrinogen-III synthase -
  ACH6FA_RS05400 (ACH6FA_05400) thiE 1037213..1037845 (-) 633 WP_057044713.1 thiamine phosphate synthase -
  ACH6FA_RS05405 (ACH6FA_05405) thiD 1037835..1038647 (-) 813 WP_002824851.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACH6FA_RS05410 (ACH6FA_05410) - 1038647..1039330 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  ACH6FA_RS05415 (ACH6FA_05415) - 1039327..1040088 (-) 762 WP_153887239.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12308.10 Da        Isoelectric Point: 6.0617

>NTDB_id=953232 ACH6FA_RS05380 WP_025399042.1 1035198..1035503(+) (ctsT) [Campylobacter coli strain YH505]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=953232 ACH6FA_RS05380 WP_025399042.1 1035198..1035503(+) (ctsT) [Campylobacter coli strain YH505]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

47.959

97.03

0.465