Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAA980_RS00650 Genome accession   NZ_AP028604
Coordinates   106320..107090 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain Pne3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101320..112090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA980_RS00630 (TKY182805_01230) - 103238..103675 (+) 438 WP_000076500.1 CoA-binding protein -
  AAA980_RS00635 (TKY182805_01240) - 103716..103976 (+) 261 WP_001859460.1 hypothetical protein -
  AAA980_RS00640 (TKY182805_01250) - 103995..105005 (-) 1011 WP_000009171.1 YeiH family protein -
  AAA980_RS00645 (TKY182805_01260) - 105154..106323 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  AAA980_RS00650 (TKY182805_01270) recO 106320..107090 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  AAA980_RS00655 (TKY182805_01280) plsX 107087..108079 (+) 993 WP_000717467.1 phosphate acyltransferase PlsX -
  AAA980_RS00660 (TKY182805_01290) - 108085..108318 (+) 234 WP_000136447.1 acyl carrier protein -
  AAA980_RS00665 (TKY182805_01300) - 108364..108654 (+) 291 Protein_125 IS5/IS1182 family transposase -
  AAA980_RS00670 (TKY182805_01310) cipB 108857..109015 (+) 159 WP_001093073.1 bacteriocin class II family protein Regulator
  AAA980_RS00675 - 109018..109143 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AAA980_RS00680 (TKY182805_01320) comA 109734..111887 (+) 2154 WP_000668282.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=95320 AAA980_RS00650 WP_000616164.1 106320..107090(+) (recO) [Streptococcus pneumoniae strain Pne3]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=95320 AAA980_RS00650 WP_000616164.1 106320..107090(+) (recO) [Streptococcus pneumoniae strain Pne3]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment