Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHQ28_RS07385 Genome accession   NZ_CP148233
Coordinates   1426703..1427884 (-) Length   393 a.a.
NCBI ID   WP_052789526.1    Uniprot ID   A0A5Y8XKZ0
Organism   Campylobacter jejuni strain Z1323CCJ0027     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1421703..1432884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ28_RS07355 (WHQ28_07355) - 1422248..1422589 (+) 342 WP_002868232.1 hypothetical protein -
  WHQ28_RS07360 (WHQ28_07360) flgM 1422652..1422849 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHQ28_RS07365 (WHQ28_07365) - 1422891..1423325 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHQ28_RS07370 (WHQ28_07370) flgK 1423335..1425161 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  WHQ28_RS07375 (WHQ28_07375) - 1425178..1425942 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHQ28_RS07380 (WHQ28_07380) - 1425946..1426710 (+) 765 WP_038814201.1 TSUP family transporter -
  WHQ28_RS07385 (WHQ28_07385) ctsF 1426703..1427884 (-) 1182 WP_052789526.1 type II secretion system F family protein Machinery gene
  WHQ28_RS07390 (WHQ28_07390) ctsE 1427881..1429440 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHQ28_RS07395 (WHQ28_07395) ctsX 1429430..1430017 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ28_RS07400 (WHQ28_07400) ctsP 1430021..1430629 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ28_RS07405 (WHQ28_07405) ctsD 1430622..1432034 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ28_RS07410 (WHQ28_07410) ctsR 1432012..1432323 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45677.29 Da        Isoelectric Point: 8.7508

>NTDB_id=953193 WHQ28_RS07385 WP_052789526.1 1426703..1427884(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0027]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISCLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=953193 WHQ28_RS07385 WP_052789526.1 1426703..1427884(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0027]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTTGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8XKZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985