Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHQ28_RS07400 Genome accession   NZ_CP148233
Coordinates   1430021..1430629 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0027     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425021..1435629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ28_RS07375 (WHQ28_07375) - 1425178..1425942 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHQ28_RS07380 (WHQ28_07380) - 1425946..1426710 (+) 765 WP_038814201.1 TSUP family transporter -
  WHQ28_RS07385 (WHQ28_07385) ctsF 1426703..1427884 (-) 1182 WP_052789526.1 type II secretion system F family protein Machinery gene
  WHQ28_RS07390 (WHQ28_07390) ctsE 1427881..1429440 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHQ28_RS07395 (WHQ28_07395) ctsX 1429430..1430017 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ28_RS07400 (WHQ28_07400) ctsP 1430021..1430629 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ28_RS07405 (WHQ28_07405) ctsD 1430622..1432034 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ28_RS07410 (WHQ28_07410) ctsR 1432012..1432323 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=953196 WHQ28_RS07400 WP_002851464.1 1430021..1430629(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0027]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=953196 WHQ28_RS07400 WP_002851464.1 1430021..1430629(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0027]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995