Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP30_RS03305 Genome accession   NZ_CP148232
Coordinates   626794..627231 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0028     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621794..632231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP30_RS03275 (WHP30_03275) - 622286..622879 (+) 594 WP_250486002.1 hypothetical protein -
  WHP30_RS03280 (WHP30_03280) - 622866..623438 (+) 573 WP_250486004.1 hypothetical protein -
  WHP30_RS03285 (WHP30_03285) - 623462..624106 (+) 645 WP_223212446.1 DUF4118 domain-containing protein -
  WHP30_RS03290 (WHP30_03290) uvrB 624208..626181 (-) 1974 WP_038814277.1 excinuclease ABC subunit UvrB -
  WHP30_RS03295 (WHP30_03295) - 626335..626565 (+) 231 WP_002852327.1 hypothetical protein -
  WHP30_RS03300 (WHP30_03300) - 626555..626797 (+) 243 WP_002854947.1 hypothetical protein -
  WHP30_RS03305 (WHP30_03305) Cj0683 626794..627231 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP30_RS03310 (WHP30_03310) priA 627213..629066 (+) 1854 WP_002866530.1 primosomal protein N' -
  WHP30_RS03315 (WHP30_03315) cipA 629076..630470 (-) 1395 WP_011812728.1 DUF2972 domain-containing protein -
  WHP30_RS03320 (WHP30_03320) ispG 630616..631689 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=953151 WHP30_RS03305 WP_002852324.1 626794..627231(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0028]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=953151 WHP30_RS03305 WP_002852324.1 626794..627231(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0028]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1