Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   QML92_RS09305 Genome accession   NZ_AP025937
Coordinates   1823960..1824406 (-) Length   148 a.a.
NCBI ID   WP_001842224.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700792     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1818960..1829406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML92_RS09275 (PC0780_18110) - 1819689..1820513 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  QML92_RS09280 (PC0780_18120) rnpA 1820488..1820859 (-) 372 WP_000739246.1 ribonuclease P protein component -
  QML92_RS09285 - 1820876..1821007 (-) 132 WP_000768904.1 hypothetical protein -
  QML92_RS09290 (PC0780_18130) - 1821008..1822198 (-) 1191 WP_000167766.1 acetate kinase -
  QML92_RS09295 (PC0780_18140) comYH 1822249..1823202 (-) 954 WP_000345100.1 class I SAM-dependent methyltransferase Machinery gene
  QML92_RS09300 - 1823263..1823857 (-) 595 Protein_1815 methyltransferase domain-containing protein -
  QML92_RS09305 (PC0780_18170) comGG/cglG 1823960..1824406 (-) 447 WP_001842224.1 competence type IV pilus minor pilin ComGG Machinery gene
  QML92_RS09310 comGF/cglF 1824384..1824845 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  QML92_RS09315 (PC0780_18190) comGE/cglE 1824808..1825110 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  QML92_RS09320 (PC0780_18200) comGD/cglD 1825073..1825477 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  QML92_RS09325 (PC0780_18210) comGC/cglC 1825470..1825796 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  QML92_RS09330 (PC0780_18220) comGB/cglB 1825798..1826814 (-) 1017 WP_078102766.1 competence type IV pilus assembly protein ComGB Machinery gene
  QML92_RS09335 (PC0780_18230) comGA/cglA/cilD 1826762..1827703 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  QML92_RS09340 (PC0780_18240) - 1827779..1828144 (-) 366 WP_000286415.1 DUF1033 family protein -
  QML92_RS09345 (PC0780_18250) - 1828295..1829353 (-) 1059 WP_000649470.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17259.94 Da        Isoelectric Point: 10.5573

>NTDB_id=95308 QML92_RS09305 WP_001842224.1 1823960..1824406(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700792]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNTLNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=95308 QML92_RS09305 WP_001842224.1 1823960..1824406(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900700792]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATACGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment