Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   WHQ37_RS07130 Genome accession   NZ_CP148226
Coordinates   1378052..1379629 (-) Length   525 a.a.
NCBI ID   WP_338878020.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0042     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373052..1384629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ37_RS07105 (WHQ37_07105) - 1373062..1373496 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHQ37_RS07110 (WHQ37_07110) flgK 1373506..1375332 (+) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  WHQ37_RS07115 (WHQ37_07115) - 1375349..1376113 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHQ37_RS07120 (WHQ37_07120) - 1376117..1376881 (+) 765 WP_002851426.1 TSUP family transporter -
  WHQ37_RS07125 (WHQ37_07125) ctsF 1376874..1378055 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHQ37_RS07130 (WHQ37_07130) ctsE 1378052..1379629 (-) 1578 WP_338878020.1 GspE/PulE family protein Machinery gene
  WHQ37_RS07135 (WHQ37_07135) ctsX 1379619..1380206 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ37_RS07140 (WHQ37_07140) ctsP 1380210..1380818 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ37_RS07145 (WHQ37_07145) ctsD 1380811..1382229 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ37_RS07150 (WHQ37_07150) ctsR 1382201..1382518 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 525 a.a.        Molecular weight: 60861.80 Da        Isoelectric Point: 5.8213

>NTDB_id=953054 WHQ37_RS07130 WP_338878020.1 1378052..1379629(-) (ctsE) [Campylobacter jejuni strain Z1323CCJ0042]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNNDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTID
RLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACA
IRENQDKTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1578 bp        

>NTDB_id=953054 WHQ37_RS07130 WP_338878020.1 1378052..1379629(-) (ctsE) [Campylobacter jejuni strain Z1323CCJ0042]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAGGCAAGAAATAATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTT
TAATAGTGTTTTAAGAGCAATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAG
ATATTGCACTTAAAGCTTCTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGAT
AGGCTTTTGGATATGCAAGCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAA
ACTTTGTCCTTGGTGTAAGCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTG
AGCGTTGTCATCATAGTGGATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCA
ATTAGGGAAAATCAAGATAAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTT
AAAAAAAGCCAAAGAAGGTCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

98.476

100

0.985