Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHQ37_RS07140 Genome accession   NZ_CP148226
Coordinates   1380210..1380818 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0042     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375210..1385818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ37_RS07115 (WHQ37_07115) - 1375349..1376113 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHQ37_RS07120 (WHQ37_07120) - 1376117..1376881 (+) 765 WP_002851426.1 TSUP family transporter -
  WHQ37_RS07125 (WHQ37_07125) ctsF 1376874..1378055 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHQ37_RS07130 (WHQ37_07130) ctsE 1378052..1379629 (-) 1578 WP_338878020.1 GspE/PulE family protein Machinery gene
  WHQ37_RS07135 (WHQ37_07135) ctsX 1379619..1380206 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHQ37_RS07140 (WHQ37_07140) ctsP 1380210..1380818 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ37_RS07145 (WHQ37_07145) ctsD 1380811..1382229 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ37_RS07150 (WHQ37_07150) ctsR 1382201..1382518 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=953056 WHQ37_RS07140 WP_002851464.1 1380210..1380818(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0042]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=953056 WHQ37_RS07140 WP_002851464.1 1380210..1380818(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0042]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995