Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   ACH6FK_RS03585 Genome accession   NZ_CP172385
Coordinates   714189..714494 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain YH511     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709189..719494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FK_RS03550 (ACH6FK_03550) - 709604..710365 (+) 762 WP_072213627.1 ATP-binding protein -
  ACH6FK_RS03555 (ACH6FK_03555) - 710362..711045 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  ACH6FK_RS03560 (ACH6FK_03560) thiD 711045..711857 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACH6FK_RS03565 (ACH6FK_03565) thiE 711847..712479 (+) 633 WP_002834515.1 thiamine phosphate synthase -
  ACH6FK_RS03570 (ACH6FK_03570) - 712457..713086 (+) 630 WP_002777119.1 uroporphyrinogen-III synthase -
  ACH6FK_RS03575 (ACH6FK_03575) - 713079..713531 (-) 453 WP_002777117.1 hypothetical protein -
  ACH6FK_RS03580 (ACH6FK_03580) - 713528..714196 (-) 669 WP_002797569.1 hypothetical protein -
  ACH6FK_RS03585 (ACH6FK_03585) ctsT 714189..714494 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  ACH6FK_RS03590 (ACH6FK_03590) proC 714491..715228 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FK_RS03595 (ACH6FK_03595) fliW 715228..715617 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  ACH6FK_RS03600 (ACH6FK_03600) - 715781..716428 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  ACH6FK_RS03605 (ACH6FK_03605) lon 716444..718819 (+) 2376 WP_002783351.1 endopeptidase La -
  ACH6FK_RS03610 (ACH6FK_03610) rpsR 718875..719135 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=953005 ACH6FK_RS03585 WP_002790525.1 714189..714494(-) (ctsT) [Campylobacter coli strain YH511]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=953005 ACH6FK_RS03585 WP_002790525.1 714189..714494(-) (ctsT) [Campylobacter coli strain YH511]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475