Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP40_RS04025 Genome accession   NZ_CP148223
Coordinates   771657..772172 (+) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain Z1323CCJ0045     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 766657..777172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP40_RS04000 (WHP40_04000) - 767117..767455 (+) 339 WP_002852397.1 hypothetical protein -
  WHP40_RS04005 (WHP40_04005) cdsA 767464..768189 (+) 726 WP_002834214.1 phosphatidate cytidylyltransferase -
  WHP40_RS04010 (WHP40_04010) dxr 768186..769256 (+) 1071 WP_002868459.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP40_RS04015 (WHP40_04015) - 769258..770652 (+) 1395 WP_002868458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP40_RS04020 (WHP40_04020) tsaD 770649..771656 (+) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP40_RS04025 (WHP40_04025) ctsG 771657..772172 (+) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP40_RS04030 (WHP40_04030) - 772172..773413 (+) 1242 WP_002864247.1 DUF2920 family protein -
  WHP40_RS04035 (WHP40_04035) - 773423..775246 (+) 1824 WP_004297740.1 motility associated factor glycosyltransferase family protein -
  WHP40_RS04040 (WHP40_04040) - 775243..777060 (+) 1818 WP_004297673.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=952994 WHP40_RS04025 WP_002799196.1 771657..772172(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0045]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952994 WHP40_RS04025 WP_002799196.1 771657..772172(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0045]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942