Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WHP79_RS02940 Genome accession   NZ_CP148221
Coordinates   561955..562605 (-) Length   216 a.a.
NCBI ID   WP_002855187.1    Uniprot ID   A0A3H9FWN6
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 556955..567605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS02905 (WHP79_02905) - 557333..558337 (+) 1005 WP_079344011.1 hypothetical protein -
  WHP79_RS02910 (WHP79_02910) tlyA 558334..559095 (+) 762 WP_032590817.1 TlyA family RNA methyltransferase -
  WHP79_RS02915 (WHP79_02915) ribF 559061..559915 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  WHP79_RS02920 (WHP79_02920) cmoA 559902..560612 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  WHP79_RS02925 (WHP79_02925) - 560602..560823 (-) 222 WP_002859102.1 EexN family lipoprotein -
  WHP79_RS02930 (WHP79_02930) - 560820..561254 (-) 435 WP_060806463.1 EexN family lipoprotein -
  WHP79_RS02935 (WHP79_02935) - 561312..561944 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  WHP79_RS02940 (WHP79_02940) CJE0566 561955..562605 (-) 651 WP_002855187.1 DNA/RNA non-specific endonuclease Regulator
  WHP79_RS02945 (WHP79_02945) nth 562602..563228 (-) 627 WP_002852225.1 endonuclease III -
  WHP79_RS02950 (WHP79_02950) peb4 563309..564130 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  WHP79_RS02955 (WHP79_02955) fbaA 564130..565194 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  WHP79_RS02960 (WHP79_02960) - 565289..566731 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25505.26 Da        Isoelectric Point: 9.7361

>NTDB_id=952930 WHP79_RS02940 WP_002855187.1 561955..562605(-) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0052]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=952930 WHP79_RS02940 WP_002855187.1 561955..562605(-) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0052]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAGGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9FWN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.558

91.204

0.644
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634