Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FQ_RS05240 Genome accession   NZ_CP172383
Coordinates   1016737..1017288 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni strain YH004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011737..1022288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FQ_RS05205 (ACH6FQ_05205) - 1011928..1012352 (+) 425 Protein_1003 GNAT family N-acetyltransferase -
  ACH6FQ_RS05210 (ACH6FQ_05210) - 1012416..1013036 (+) 621 Protein_1004 nitroreductase family protein -
  ACH6FQ_RS05215 (ACH6FQ_05215) - 1013036..1013641 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  ACH6FQ_RS05220 (ACH6FQ_05220) pgsA 1013766..1014302 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FQ_RS05225 (ACH6FQ_05225) rseP 1014299..1015405 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  ACH6FQ_RS05230 (ACH6FQ_05230) - 1015398..1016264 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  ACH6FQ_RS05235 (ACH6FQ_05235) rpsF 1016351..1016728 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  ACH6FQ_RS05240 (ACH6FQ_05240) ssb 1016737..1017288 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  ACH6FQ_RS05245 (ACH6FQ_05245) rpsR 1017299..1017559 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6FQ_RS05250 (ACH6FQ_05250) lon 1017620..1019995 (-) 2376 WP_002878791.1 endopeptidase La -
  ACH6FQ_RS05255 (ACH6FQ_05255) - 1020012..1020659 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  ACH6FQ_RS05260 (ACH6FQ_05260) fliW 1020820..1021209 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FQ_RS05265 (ACH6FQ_05265) proC 1021209..1021940 (+) 732 WP_002868635.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FQ_RS05270 (ACH6FQ_05270) ctsT 1021937..1022239 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=952902 ACH6FQ_RS05240 WP_002865738.1 1016737..1017288(+) (ssb) [Campylobacter jejuni strain YH004]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=952902 ACH6FQ_RS05240 WP_002865738.1 1016737..1017288(+) (ssb) [Campylobacter jejuni strain YH004]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361