Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP61_RS06350 Genome accession   NZ_CP148214
Coordinates   1174439..1174876 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1169439..1179876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS06320 (WHP61_06320) - 1170058..1170531 (+) 474 WP_317948528.1 hypothetical protein -
  WHP61_RS06325 (WHP61_06325) - 1170515..1171075 (+) 561 WP_338877734.1 hypothetical protein -
  WHP61_RS06330 (WHP61_06330) - 1171107..1171751 (+) 645 WP_223212446.1 DUF4118 domain-containing protein -
  WHP61_RS06335 (WHP61_06335) uvrB 1171853..1173826 (-) 1974 WP_070289748.1 excinuclease ABC subunit UvrB -
  WHP61_RS06340 (WHP61_06340) - 1173980..1174210 (+) 231 WP_002852327.1 hypothetical protein -
  WHP61_RS06345 (WHP61_06345) - 1174200..1174442 (+) 243 WP_002854947.1 hypothetical protein -
  WHP61_RS06350 (WHP61_06350) Cj0683 1174439..1174876 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP61_RS06355 (WHP61_06355) priA 1174858..1176711 (+) 1854 WP_002872608.1 primosomal protein N' -
  WHP61_RS06360 (WHP61_06360) cipA 1176721..1178115 (-) 1395 WP_144659518.1 DUF2972 domain-containing protein -
  WHP61_RS06365 (WHP61_06365) ispG 1178261..1179334 (+) 1074 WP_070289746.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952807 WHP61_RS06350 WP_002852324.1 1174439..1174876(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0059]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952807 WHP61_RS06350 WP_002852324.1 1174439..1174876(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1