Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WHP61_RS05925 Genome accession   NZ_CP148214
Coordinates   1087836..1088486 (-) Length   216 a.a.
NCBI ID   WP_070289793.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082836..1093486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS05890 (WHP61_05890) - 1083214..1084218 (+) 1005 WP_079263945.1 hypothetical protein -
  WHP61_RS05895 (WHP61_05895) tlyA 1084215..1084976 (+) 762 WP_070289795.1 TlyA family RNA methyltransferase -
  WHP61_RS05900 (WHP61_05900) ribF 1084942..1085796 (+) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  WHP61_RS05905 (WHP61_05905) cmoA 1085783..1086493 (+) 711 WP_079556976.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  WHP61_RS05910 (WHP61_05910) - 1086483..1086704 (-) 222 WP_002859102.1 EexN family lipoprotein -
  WHP61_RS05915 (WHP61_05915) - 1086701..1087135 (-) 435 WP_002872584.1 EexN family lipoprotein -
  WHP61_RS05920 (WHP61_05920) - 1087193..1087825 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  WHP61_RS05925 (WHP61_05925) CJE0566 1087836..1088486 (-) 651 WP_070289793.1 DNA/RNA non-specific endonuclease Regulator
  WHP61_RS05930 (WHP61_05930) nth 1088483..1089109 (-) 627 WP_004306729.1 endonuclease III -
  WHP61_RS05935 (WHP61_05935) peb4 1089190..1090011 (+) 822 WP_002856774.1 peptidylprolyl isomerase PEB4 -
  WHP61_RS05940 (WHP61_05940) fbaA 1090011..1091075 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  WHP61_RS05945 (WHP61_05945) - 1091170..1092612 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25436.20 Da        Isoelectric Point: 9.7361

>NTDB_id=952805 WHP61_RS05925 WP_070289793.1 1087836..1088486(-) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0059]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIGQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=952805 WHP61_RS05925 WP_070289793.1 1087836..1088486(-) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGTTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAATTGGTCAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63