Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHQ12_RS08045 Genome accession   NZ_CP148213
Coordinates   1488813..1489400 (+) Length   195 a.a.
NCBI ID   WP_002867245.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1483813..1494400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS08030 (WHQ12_08030) ctsR 1486507..1486818 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHQ12_RS08035 (WHQ12_08035) ctsD 1486796..1488208 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ12_RS08040 (WHQ12_08040) ctsP 1488201..1488809 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ12_RS08045 (WHQ12_08045) ctsX 1488813..1489400 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ12_RS08050 (WHQ12_08050) ctsE 1489390..1490949 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene
  WHQ12_RS08055 (WHQ12_08055) ctsF 1490946..1492127 (+) 1182 WP_338851158.1 type II secretion system F family protein Machinery gene
  WHQ12_RS08060 (WHQ12_08060) - 1492120..1492884 (-) 765 WP_002855821.1 TSUP family transporter -
  WHQ12_RS08065 (WHQ12_08065) - 1492888..1493652 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23354.40 Da        Isoelectric Point: 9.8409

>NTDB_id=952779 WHQ12_RS08045 WP_002867245.1 1488813..1489400(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0062]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPNYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=952779 WHQ12_RS08045 WP_002867245.1 1488813..1489400(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0062]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAACTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATTGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.462

100

0.985