Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ12_RS08030 Genome accession   NZ_CP148213
Coordinates   1486507..1486818 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481507..1491818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS08020 (WHQ12_08020) - 1482189..1482830 (+) 642 WP_002867242.1 HAD family hydrolase -
  WHQ12_RS08025 (WHQ12_08025) nifJ 1482923..1486483 (+) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ12_RS08030 (WHQ12_08030) ctsR 1486507..1486818 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHQ12_RS08035 (WHQ12_08035) ctsD 1486796..1488208 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ12_RS08040 (WHQ12_08040) ctsP 1488201..1488809 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ12_RS08045 (WHQ12_08045) ctsX 1488813..1489400 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ12_RS08050 (WHQ12_08050) ctsE 1489390..1490949 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952776 WHQ12_RS08030 WP_002855438.1 1486507..1486818(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0062]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952776 WHQ12_RS08030 WP_002855438.1 1486507..1486818(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0062]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1