Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   WHQ12_RS03580 Genome accession   NZ_CP148213
Coordinates   668618..669268 (+) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 663618..674268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS03560 (WHQ12_03560) - 664492..665934 (-) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -
  WHQ12_RS03565 (WHQ12_03565) fbaA 666029..667093 (-) 1065 WP_057041372.1 class II fructose-bisphosphate aldolase -
  WHQ12_RS03570 (WHQ12_03570) peb4 667093..667914 (-) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  WHQ12_RS03575 (WHQ12_03575) nth 667995..668621 (+) 627 WP_002852225.1 endonuclease III -
  WHQ12_RS03580 (WHQ12_03580) CJE0566 668618..669268 (+) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  WHQ12_RS03585 (WHQ12_03585) - 669279..669911 (+) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  WHQ12_RS03590 (WHQ12_03590) - 669969..670403 (+) 435 WP_002855128.1 EexN family lipoprotein -
  WHQ12_RS03595 (WHQ12_03595) - 670400..670621 (+) 222 WP_002859102.1 EexN family lipoprotein -
  WHQ12_RS03600 (WHQ12_03600) cmoA 670611..671321 (-) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  WHQ12_RS03605 (WHQ12_03605) ribF 671308..672162 (-) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  WHQ12_RS03610 (WHQ12_03610) tlyA 672128..672889 (-) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  WHQ12_RS03615 (WHQ12_03615) - 672886..673890 (-) 1005 WP_079254780.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=952768 WHQ12_RS03580 WP_002886738.1 668618..669268(+) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0062]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=952768 WHQ12_RS03580 WP_002886738.1 668618..669268(+) (CJE0566) [Campylobacter jejuni strain Z1323CCJ0062]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63