Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   WHP71_RS01455 Genome accession   NZ_CP148210
Coordinates   271896..273308 (+) Length   470 a.a.
NCBI ID   WP_002856543.1    Uniprot ID   A0A2R4CZP6
Organism   Campylobacter jejuni strain Z1323CCJ0063     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266896..278308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP71_RS01440 (WHP71_01440) - 267289..267930 (+) 642 WP_002867242.1 HAD family hydrolase -
  WHP71_RS01445 (WHP71_01445) nifJ 268023..271583 (+) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP71_RS01450 (WHP71_01450) ctsR 271607..271918 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP71_RS01455 (WHP71_01455) ctsD 271896..273308 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP71_RS01460 (WHP71_01460) ctsP 273301..273909 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP71_RS01465 (WHP71_01465) ctsX 273913..274500 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP71_RS01470 (WHP71_01470) ctsE 274490..276049 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene
  WHP71_RS01475 (WHP71_01475) ctsF 276046..277227 (+) 1182 WP_338851158.1 type II secretion system F family protein Machinery gene
  WHP71_RS01480 (WHP71_01480) - 277220..277984 (-) 765 WP_002855821.1 TSUP family transporter -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53094.65 Da        Isoelectric Point: 6.6184

>NTDB_id=952736 WHP71_RS01455 WP_002856543.1 271896..273308(+) (ctsD) [Campylobacter jejuni strain Z1323CCJ0063]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=952736 WHP71_RS01455 WP_002856543.1 271896..273308(+) (ctsD) [Campylobacter jejuni strain Z1323CCJ0063]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAATATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAACCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGTGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAACAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTCAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4CZP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

100

100

1