Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP71_RS01460 Genome accession   NZ_CP148210
Coordinates   273301..273909 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0063     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 268301..278909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP71_RS01450 (WHP71_01450) ctsR 271607..271918 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP71_RS01455 (WHP71_01455) ctsD 271896..273308 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP71_RS01460 (WHP71_01460) ctsP 273301..273909 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP71_RS01465 (WHP71_01465) ctsX 273913..274500 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP71_RS01470 (WHP71_01470) ctsE 274490..276049 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene
  WHP71_RS01475 (WHP71_01475) ctsF 276046..277227 (+) 1182 WP_338851158.1 type II secretion system F family protein Machinery gene
  WHP71_RS01480 (WHP71_01480) - 277220..277984 (-) 765 WP_002855821.1 TSUP family transporter -
  WHP71_RS01485 (WHP71_01485) - 277988..278752 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952737 WHP71_RS01460 WP_002851464.1 273301..273909(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0063]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952737 WHP71_RS01460 WP_002851464.1 273301..273909(+) (ctsP) [Campylobacter jejuni strain Z1323CCJ0063]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995