Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP58_RS08465 Genome accession   NZ_CP148206
Coordinates   1587851..1589032 (+) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain Z1323CCJ0066     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582851..1594032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP58_RS08440 (WHP58_08440) ctsR 1583412..1583723 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP58_RS08445 (WHP58_08445) ctsD 1583701..1585113 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP58_RS08450 (WHP58_08450) ctsP 1585106..1585714 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP58_RS08455 (WHP58_08455) ctsX 1585718..1586305 (+) 588 WP_052823199.1 hypothetical protein Machinery gene
  WHP58_RS08460 (WHP58_08460) ctsE 1586295..1587854 (+) 1560 WP_052823198.1 GspE/PulE family protein Machinery gene
  WHP58_RS08465 (WHP58_08465) ctsF 1587851..1589032 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP58_RS08470 (WHP58_08470) - 1589025..1589789 (-) 765 WP_002851426.1 TSUP family transporter -
  WHP58_RS08475 (WHP58_08475) - 1589793..1590557 (-) 765 WP_002851318.1 TIGR02757 family protein -
  WHP58_RS08480 (WHP58_08480) flgK 1590574..1592400 (-) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  WHP58_RS08485 (WHP58_08485) - 1592410..1592844 (-) 435 WP_002779263.1 flagellar protein FlgN -
  WHP58_RS08490 (WHP58_08490) flgM 1592887..1593084 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP58_RS08495 (WHP58_08495) - 1593147..1593488 (-) 342 WP_002851191.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=952701 WHP58_RS08465 WP_002851165.1 1587851..1589032(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0066]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952701 WHP58_RS08465 WP_002851165.1 1587851..1589032(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0066]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99