Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   WHP75_RS05720 Genome accession   NZ_CP148203
Coordinates   1069749..1070480 (+) Length   243 a.a.
NCBI ID   WP_002859150.1    Uniprot ID   A0AB36G763
Organism   Campylobacter jejuni strain Z1323CCJ0069     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1064749..1075480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP75_RS05690 (WHP75_05690) rpsF 1064891..1065268 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  WHP75_RS05695 (WHP75_05695) ssb 1065277..1065828 (+) 552 WP_002865738.1 single-stranded DNA-binding protein -
  WHP75_RS05700 (WHP75_05700) rpsR 1065839..1066099 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP75_RS05705 (WHP75_05705) lon 1066160..1068535 (-) 2376 WP_070289967.1 endopeptidase La -
  WHP75_RS05710 (WHP75_05710) - 1068552..1069199 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  WHP75_RS05715 (WHP75_05715) fliW 1069360..1069749 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  WHP75_RS05720 (WHP75_05720) proC 1069749..1070480 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP75_RS05725 (WHP75_05725) ctsT 1070477..1070779 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  WHP75_RS05730 (WHP75_05730) - 1070776..1071438 (+) 663 WP_052773637.1 hypothetical protein -
  WHP75_RS05735 (WHP75_05735) - 1071435..1071887 (+) 453 WP_011989916.1 hypothetical protein -
  WHP75_RS05740 (WHP75_05740) hemD 1071884..1072513 (-) 630 WP_002859147.1 uroporphyrinogen-III synthase -
  WHP75_RS05745 (WHP75_05745) thiE 1072491..1073123 (-) 633 WP_002852670.1 thiamine phosphate synthase -
  WHP75_RS05750 (WHP75_05750) thiD 1073113..1073925 (-) 813 WP_038816794.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  WHP75_RS05755 (WHP75_05755) - 1073922..1074608 (-) 687 WP_002852847.1 endonuclease III domain-containing protein -
  WHP75_RS05760 (WHP75_05760) - 1074605..1075366 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26559.95 Da        Isoelectric Point: 8.5934

>NTDB_id=952660 WHP75_RS05720 WP_002859150.1 1069749..1070480(+) (proC) [Campylobacter jejuni strain Z1323CCJ0069]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=952660 WHP75_RS05720 WP_002859150.1 1069749..1070480(+) (proC) [Campylobacter jejuni strain Z1323CCJ0069]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.588

100

0.996