Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP28_RS07215 Genome accession   NZ_CP148193
Coordinates   1408854..1409165 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain Z1323CCJ0075     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1403854..1414165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP28_RS07195 (WHP28_07195) ctsE 1404723..1406282 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  WHP28_RS07200 (WHP28_07200) ctsX 1406272..1406859 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP28_RS07205 (WHP28_07205) ctsP 1406863..1407471 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP28_RS07210 (WHP28_07210) ctsD 1407464..1408876 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP28_RS07215 (WHP28_07215) ctsR 1408854..1409165 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP28_RS07220 (WHP28_07220) nifJ 1409189..1412749 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP28_RS07225 (WHP28_07225) - 1412842..1413483 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=952540 WHP28_RS07215 WP_015016496.1 1408854..1409165(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0075]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952540 WHP28_RS07215 WP_015016496.1 1408854..1409165(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0075]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99