Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACH6FP_RS06180 Genome accession   NZ_CP172368
Coordinates   1185531..1186025 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain YH019     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180531..1191025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FP_RS06165 (ACH6FP_06165) - 1181917..1183095 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  ACH6FP_RS06170 (ACH6FP_06170) gpsA 1183105..1184001 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACH6FP_RS06175 (ACH6FP_06175) gatB 1183998..1185416 (-) 1419 WP_002858123.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  ACH6FP_RS06180 (ACH6FP_06180) luxS 1185531..1186025 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  ACH6FP_RS06185 (ACH6FP_06185) - 1186337..1187329 (+) 993 WP_002858100.1 isopenicillin N synthase family oxygenase -
  ACH6FP_RS06190 (ACH6FP_06190) - 1187340..1188110 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  ACH6FP_RS06195 (ACH6FP_06195) metE 1188122..1190386 (+) 2265 WP_002858088.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=952536 ACH6FP_RS06180 WP_002857890.1 1185531..1186025(+) (luxS) [Campylobacter jejuni strain YH019]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=952536 ACH6FP_RS06180 WP_002857890.1 1185531..1186025(+) (luxS) [Campylobacter jejuni strain YH019]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707