Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHQ29_RS03380 Genome accession   NZ_CP148190
Coordinates   635497..636678 (+) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630497..641678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS03355 (WHQ29_03355) ctsR 631058..631369 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHQ29_RS03360 (WHQ29_03360) ctsD 631347..632759 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ29_RS03365 (WHQ29_03365) ctsP 632752..633360 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ29_RS03370 (WHQ29_03370) ctsX 633364..633951 (+) 588 WP_052823199.1 hypothetical protein Machinery gene
  WHQ29_RS03375 (WHQ29_03375) ctsE 633941..635500 (+) 1560 WP_052823198.1 GspE/PulE family protein Machinery gene
  WHQ29_RS03380 (WHQ29_03380) ctsF 635497..636678 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHQ29_RS03385 (WHQ29_03385) - 636671..637435 (-) 765 WP_002851426.1 TSUP family transporter -
  WHQ29_RS03390 (WHQ29_03390) - 637439..638203 (-) 765 WP_002851318.1 TIGR02757 family protein -
  WHQ29_RS03395 (WHQ29_03395) flgK 638220..640046 (-) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  WHQ29_RS03400 (WHQ29_03400) - 640056..640490 (-) 435 WP_002779263.1 flagellar protein FlgN -
  WHQ29_RS03405 (WHQ29_03405) flgM 640534..640731 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHQ29_RS03410 (WHQ29_03410) - 640794..641135 (-) 342 WP_002851191.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=952472 WHQ29_RS03380 WP_002851165.1 635497..636678(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0080]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952472 WHQ29_RS03380 WP_002851165.1 635497..636678(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0080]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99